SimiLie
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csr_dynamic.hpp
1// SPDX-FileCopyrightText: 2024 Baptiste Legouix
2// SPDX-License-Identifier: MIT
3
4#pragma once
5
6#include <fstream>
7
8#include <ddc/ddc.hpp>
9
10#include <similie/tensor/tensor_impl.hpp>
11
12namespace sil {
13
14namespace csr {
15
16// Only natural indexing supported
17template <tensor::TensorIndex HeadTensorIndex, tensor::TensorNatIndex... TailTensorIndex>
19{
20private:
21 ddc::DiscreteDomain<HeadTensorIndex, TailTensorIndex...> m_domain;
22 std::vector<std::size_t> m_coalesc_idx;
23 std::array<std::vector<std::size_t>, sizeof...(TailTensorIndex)> m_idx;
24 std::vector<double> m_values;
25
26public:
27 CsrDynamic(ddc::DiscreteDomain<HeadTensorIndex, TailTensorIndex...> domain)
28 : m_domain(domain)
29 , m_coalesc_idx({0})
30 , m_idx()
31 , m_values()
32 {
33 }
34
36 ddc::DiscreteDomain<HeadTensorIndex, TailTensorIndex...> domain,
37 std::vector<std::size_t> coalesc_idx,
38 std::array<std::vector<std::size_t>, sizeof...(TailTensorIndex)> idx,
39 std::vector<double> values)
40 : m_domain(domain)
41 , m_coalesc_idx(coalesc_idx)
42 , m_idx(idx)
43 , m_values(values)
44 {
45 }
46
47 ddc::DiscreteDomain<HeadTensorIndex, TailTensorIndex...> domain()
48 {
49 return m_domain;
50 }
51
52 std::vector<std::size_t> coalesc_idx() const // Can be constexpr with C++23
53 {
54 return m_coalesc_idx;
55 }
56
57 std::array<std::vector<std::size_t>, sizeof...(TailTensorIndex)> idx()
58 const // Can be constexpr with C++23
59 {
60 return m_idx;
61 }
62
63 std::vector<double> values() const // Can be constexpr with C++23
64 {
65 return m_values;
66 }
67
69 double,
70 ddc::DiscreteDomain<TailTensorIndex...>,
71 Kokkos::layout_right,
72 Kokkos::DefaultHostExecutionSpace::memory_space> dense)
73 {
74 m_coalesc_idx.push_back(m_coalesc_idx.back());
75 ddc::for_each(dense.domain(), [&](ddc::DiscreteElement<TailTensorIndex...> elem) {
76 if (dense(elem) != 0) {
77 m_coalesc_idx.back() += 1;
78 (m_idx[ddc::type_seq_rank_v<
79 TailTensorIndex,
80 ddc::detail::TypeSeq<TailTensorIndex...>>]
81 .push_back(elem.template uid<TailTensorIndex>()),
82 ...);
83 m_values.push_back(dense(elem));
84 }
85 });
86 }
87
88 // Returns a slice orthogonal to first index
89 CsrDynamic<HeadTensorIndex, TailTensorIndex...> get(
90 ddc::DiscreteElement<HeadTensorIndex> id) const
91 {
92 const std::size_t id_begin = m_coalesc_idx[id.uid()];
93 const std::size_t id_end = m_coalesc_idx[id.uid() + 1];
94 std::vector<std::size_t> new_coalesc_idx {0, id_end - id_begin};
95 std::array<std::vector<std::size_t>, sizeof...(TailTensorIndex)> new_idx;
96 ((new_idx[ddc::type_seq_rank_v<TailTensorIndex, ddc::detail::TypeSeq<TailTensorIndex...>>]
97 = std::vector<std::size_t>(
98 m_idx[ddc::type_seq_rank_v<
99 TailTensorIndex,
100 ddc::detail::TypeSeq<TailTensorIndex...>>]
101 .begin()
102 + id_begin,
103 m_idx[ddc::type_seq_rank_v<
104 TailTensorIndex,
105 ddc::detail::TypeSeq<TailTensorIndex...>>]
106 .begin()
107 + id_begin + id_end)),
108 ...);
109 std::vector<double>
110 new_values(m_values.begin() + id_begin, m_values.begin() + id_begin + id_end);
111
112 return CsrDynamic<HeadTensorIndex, TailTensorIndex...>(
113 ddc::DiscreteDomain<HeadTensorIndex, TailTensorIndex...>(m_domain),
114 new_coalesc_idx,
115 new_idx,
116 new_values);
117 }
118
119 void write(std::ofstream& file)
120 {
121 file
122 .write(reinterpret_cast<const char*>(coalesc_idx().data()),
123 coalesc_idx().size() * sizeof(std::size_t));
124 file << "break\n";
125 for (std::size_t i = 0; i < sizeof...(TailTensorIndex); ++i) {
126 file
127 .write(reinterpret_cast<const char*>(idx()[i].data()),
128 idx()[i].size() * sizeof(std::size_t));
129 file << "break\n";
130 }
131 file
132 .write(reinterpret_cast<const char*>(values().data()),
133 m_values.size() * sizeof(double));
134 file << "break\n";
135 }
136};
137
138// Convert Csr to dense tensor
139template <tensor::TensorIndex HeadId, tensor::TensorNatIndex... TailId>
141 double,
142 ddc::DiscreteDomain<HeadId, TailId...>,
143 Kokkos::layout_right,
144 Kokkos::DefaultHostExecutionSpace::memory_space>
147 double,
148 ddc::DiscreteDomain<HeadId, TailId...>,
149 Kokkos::layout_right,
150 Kokkos::DefaultHostExecutionSpace::memory_space> dense,
152{
153 ddc::parallel_fill(dense, 0.);
154 for (std::size_t i = 0; i < csr.coalesc_idx().size() - 1; ++i) {
155 std::size_t const j_begin = csr.coalesc_idx()[i];
156 std::size_t const j_end = csr.coalesc_idx()[i + 1];
157 Kokkos::parallel_for(
158 "csr2dense",
159 Kokkos::RangePolicy<Kokkos::DefaultHostExecutionSpace>(j_begin, j_end),
160 [&](const int j) {
161 dense(ddc::DiscreteElement<HeadId>(i),
162 ddc::DiscreteElement<TailId...>(csr.idx()[ddc::type_seq_rank_v<
163 TailId,
164 ddc::detail::TypeSeq<TailId...>>][j]...))
165 = csr.values()[j];
166 });
167 }
168 return dense;
169}
170
171template <class... TensorIndex>
172std::ostream& operator<<(std::ostream& os, CsrDynamic<TensorIndex...> const& csr)
173{
174 os << "----------\n";
175 for (std::size_t i = 0; i < csr.coalesc_idx().size(); ++i) {
176 os << csr.coalesc_idx()[i] << " ";
177 }
178 os << "\n";
179 for (std::size_t i = 0; i < csr.idx()[0].size(); ++i) {
180 for (std::size_t j = 0; j < sizeof...(TensorIndex) - 1; ++j) {
181 os << csr.idx()[j][i] << " ";
182 }
183 os << csr.values()[i];
184 os << "\n";
185 }
186 return os;
187}
188
189} // namespace csr
190
191} // namespace sil
CsrDynamic(ddc::DiscreteDomain< HeadTensorIndex, TailTensorIndex... > domain)
CsrDynamic(ddc::DiscreteDomain< HeadTensorIndex, TailTensorIndex... > domain, std::vector< std::size_t > coalesc_idx, std::array< std::vector< std::size_t >, sizeof...(TailTensorIndex)> idx, std::vector< double > values)
std::array< std::vector< std::size_t >, sizeof...(TailTensorIndex)> idx() const
void write(std::ofstream &file)
std::vector< double > values() const
CsrDynamic< HeadTensorIndex, TailTensorIndex... > get(ddc::DiscreteElement< HeadTensorIndex > id) const
ddc::DiscreteDomain< HeadTensorIndex, TailTensorIndex... > domain()
void push_back(sil::tensor::Tensor< double, ddc::DiscreteDomain< TailTensorIndex... >, Kokkos::layout_right, Kokkos::DefaultHostExecutionSpace::memory_space > dense)
std::vector< std::size_t > coalesc_idx() const
sil::tensor::Tensor< double, ddc::DiscreteDomain< HeadId, TailId... >, Kokkos::layout_right, Kokkos::DefaultHostExecutionSpace::memory_space > csr2dense(sil::tensor::Tensor< double, ddc::DiscreteDomain< HeadId, TailId... >, Kokkos::layout_right, Kokkos::DefaultHostExecutionSpace::memory_space > dense, CsrDynamic< HeadId, TailId... > csr)
std::ostream & operator<<(std::ostream &os, Csr< N, TensorIndex... > const &csr)
Definition csr.hpp:185
Tensor(ddc::Chunk< ElementType, SupportType, Allocator >) -> Tensor< ElementType, SupportType, Kokkos::layout_right, typename Allocator::memory_space >
The top-level namespace of SimiLie.
Definition csr.hpp:14